CLDN2

Chr XXLR

claudin 2

Also known as: OAZON, claudin-2

This gene product belongs to the claudin protein family whose members have been identified as major integral membrane proteins localized exclusively at tight junctions. Claudins are expressed in an organ-specific manner and regulate tissue-specific physiologic properties of tight junctions. This protein is expressed in the intestine. Alternatively spliced transcript variants with different 5' untranslated region have been found for this gene.[provided by RefSeq, Jan 2010]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

?Azoospermia, obstructive, with nephrolithiasisMIM #301060
XLR

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
49
Pubs (1 yr)
P/LP submissions
P/LP missense
0.75
LOEUF
Mechanism
📖
GeneReview available — CLDN2
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.75LOEUF
pLI 0.703
Z-score 1.85
OE 0.00 (0.000.75)
Moderately constrained

Typical tolerance to LoF variation

Missense Constraint?
1.61Z-score
OE missense 0.51 (0.400.66)
44 obs / 86.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.00 (0.000.75)
00.351.4
Missense OE?0.51 (0.400.66)
00.61.4
Synonymous OE?0.82
01.21.6
LoF obs/exp: 0 / 4.0Missense obs/exp: 44 / 86.2Syn Z: 0.83

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CLDN2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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