CIB2

Chr 15AR

calcium and integrin binding family member 2

Also known as: DFNB48, KIP2, USH1J

The protein encoded by CIB2 is a calcium-binding regulatory protein that acts as an auxiliary subunit of mechanotransduction channels in hair cells and is essential for hearing, while also playing a critical role in photoreceptor cell maintenance. Mutations cause autosomal recessive nonsyndromic deafness (DFNB48) and Usher syndrome type 1J, which combines congenital profound hearing loss with progressive vision loss due to retinitis pigmentosa. The gene shows relatively low constraint against loss-of-function variants (pLI 0.001, LOEUF 1.09), but mutations consistently affect both auditory and visual function when present.

GeneReviewsOMIMResearchSummary from RefSeq, UniProt
LOFmechanismARLOEUF 1.091 OMIM phenotype
Clinical SummaryCIB2
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Gene-Disease Validity (ClinGen)
Usher syndrome type 1 · ARRefuted

Refuted — evidence has disproved this relationship

2 total gene-disease associations curated

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📖
GeneReview available — CIB2
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.09LOEUF
pLI 0.001
Z-score 1.37
OE 0.55 (0.301.09)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.52Z-score
OE missense 0.86 (0.731.02)
98 obs / 113.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.55 (0.301.09)
00.351.4
Missense OE0.86 (0.731.02)
00.61.4
Synonymous OE0.93
01.21.6
LoF obs/exp: 6 / 10.9Missense obs/exp: 98 / 113.5Syn Z: 0.38
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
strongCIB2-related nonsyndromic deafnessOTHERAR
definitiveCIB2-related Usher syndromeLOFAR

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.78top 25%
GOF
0.82top 10%
LOF
0.2289th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CIB2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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