CHSY1

Chr 15AR

chondroitin sulfate synthase 1

Also known as: CHSY, CSS1, ChSy-1, TPBS

This protein functions as a dual transferase enzyme that synthesizes chondroitin sulfate by adding both glucuronic acid and N-acetylgalactosamine to the growing polymer chain, and negatively regulates bone formation through modulation of NOTCH signaling. Mutations cause Temtamy preaxial brachydactyly syndrome, which involves limb malformations, inherited in an autosomal recessive pattern. The gene shows high constraint against loss-of-function variants (LOEUF 0.405), indicating that such mutations are typically not tolerated.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismARLOEUF 0.411 OMIM phenotype
Clinical SummaryCHSY1
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.71) — some intolerance to loss-of-function variants.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.41LOEUF
pLI 0.708
Z-score 3.81
OE 0.19 (0.100.41)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
0.83Z-score
OE missense 0.89 (0.810.96)
376 obs / 424.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.19 (0.100.41)
00.351.4
Missense OE0.89 (0.810.96)
00.61.4
Synonymous OE1.19
01.21.6
LoF obs/exp: 5 / 26.0Missense obs/exp: 376 / 424.1Syn Z: -1.96

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CHSY1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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