CHD1L

Chr 1

chromodomain helicase DNA binding protein 1 like

Also known as: ALC1, CHDL

This gene encodes an ATP-dependent chromatin remodeler that recognizes poly-ADP-ribosylated histones at DNA damage sites and catalyzes nucleosome sliding to facilitate DNA repair. Mutations cause autosomal dominant intellectual disability with epilepsy and characteristic dysmorphic features, typically presenting in early childhood. The gene is not highly constrained against loss-of-function variants, and clinical presentations can include developmental delay, seizures, and craniofacial abnormalities.

OMIMResearchSummary from RefSeq, UniProt
LOEUF 1.30
Clinical SummaryCHD1L
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Gene-Disease Validity (ClinGen)
congenital anomaly of kidney and urinary tract · ADLimited

Limited evidence — not for standalone diagnostic reporting

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.30LOEUF
pLI 0.000
Z-score -0.24
OE 1.04 (0.831.30)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.58Z-score
OE missense 1.08 (1.001.16)
490 obs / 455.2 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE1.04 (0.831.30)
00.351.4
Missense OE1.08 (1.001.16)
00.61.4
Synonymous OE1.00
01.21.6
LoF obs/exp: 54 / 52.1Missense obs/exp: 490 / 455.2Syn Z: -0.05

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CHD1L · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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