CFAP57

Chr 1AR

cilia and flagella associated protein 57

Also known as: SPGF95, VWS2, WDR65

This protein associates with components of the nexin-dynein regulatory complex and functions as an inner dynein arm hub that regulates ciliary and flagellar motility. Mutations cause spermatogenic failure, inherited in an autosomal recessive pattern. The gene shows minimal constraint against loss-of-function variants (pLI near 0), consistent with recessive inheritance where heterozygous carriers are typically unaffected.

OMIMResearchSummary from RefSeq, OMIM, UniProt
DNmechanismARLOEUF 1.111 OMIM phenotype
Clinical SummaryCFAP57
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Gene-Disease Validity (ClinGen)
primary ciliary dyskinesia · ARLimited

Limited evidence — not for standalone diagnostic reporting

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.11LOEUF
pLI 0.000
Z-score 1.09
OE 0.78 (0.561.11)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.45Z-score
OE missense 0.94 (0.861.02)
361 obs / 385.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.78 (0.561.11)
00.351.4
Missense OE0.94 (0.861.02)
00.61.4
Synonymous OE0.94
01.21.6
LoF obs/exp: 22 / 28.2Missense obs/exp: 361 / 385.9Syn Z: 0.61
DN
0.7228th %ile
GOF
0.5170th %ile
LOF
0.3067th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CFAP57 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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