CEP135

Chr 4AR

centrosomal protein 135

Also known as: CEP4, KIAA0635, MCPH8

The protein functions as a scaffolding protein essential for early centriole biogenesis and maintaining centriole-centriole cohesion during interphase. Mutations cause autosomal recessive primary microcephaly-8 through a loss-of-function mechanism. The condition follows an autosomal recessive inheritance pattern.

OMIMResearchSummary from RefSeq, OMIM, UniProt, Mechanism
LOFmechanismARLOEUF 0.811 OMIM phenotype
Clinical SummaryCEP135
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
6 unique Pathogenic / Likely Pathogenic· 54 VUS of 100 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.81LOEUF
pLI 0.000
Z-score 2.87
OE 0.64 (0.500.81)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.08Z-score
OE missense 0.99 (0.921.06)
565 obs / 570.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.64 (0.500.81)
00.351.4
Missense OE0.99 (0.921.06)
00.61.4
Synonymous OE0.93
01.21.6
LoF obs/exp: 46 / 72.4Missense obs/exp: 565 / 570.4Syn Z: 0.80
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
strongCEP135-related primary microcephaly and disturbed centrosomal functionLOFAR

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.7327th %ile
GOF
0.5857th %ile
LOF
0.3454th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

100 submitted variants in ClinVar

Classification Summary

Pathogenic6
VUS54
Likely Benign22
6
Pathogenic
54
VUS
22
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
6
0
0
0
6
Likely Pathogenic
0
0
0
0
0
VUS
0
54
0
0
54
Likely Benign
0
3
6
13
22
Benign
0
0
0
0
0
Total65761382

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

CEP135 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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