CDK5RAP2

Chr 9AR

CDK5 regulatory subunit associated protein 2

Also known as: C48, Cep215, MCPH3

This gene encodes a regulator of CDK5 (cyclin-dependent kinase 5) activity. The protein encoded by this gene is localized to the centrosome and Golgi complex, interacts with CDK5R1 and pericentrin (PCNT), plays a role in centriole engagement and microtubule nucleation, and has been linked to primary microcephaly and Alzheimer's disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2013]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Microcephaly 3, primary, autosomal recessiveMIM #604804
AR

Clinical highlights

Gene-disease validity (ClinGen)
autosomal recessive primary microcephaly · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
26
Pubs (1 yr)
P/LP submissions
P/LP missense
0.66
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.66LOEUF
pLI 0.000
Z-score 4.41
OE 0.53 (0.420.66)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-0.37Z-score
OE missense 1.03 (0.981.09)
1005 obs / 972.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.53 (0.420.66)
00.351.4
Missense OE?1.03 (0.981.09)
00.61.4
Synonymous OE?0.98
01.21.6
LoF obs/exp: 54 / 102.1Missense obs/exp: 1005 / 972.5Syn Z: 0.35

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CDK5RAP2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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