CDC42

Chr 1

cell division cycle 42

Also known as: CDC42Hs, G25K, TKS

The protein encoded by this gene is a small GTPase of the Rho-subfamily, which regulates signaling pathways that control diverse cellular functions including cell morphology, migration, endocytosis and cell cycle progression. This protein is highly similar to Saccharomyces cerevisiae Cdc 42, and is able to complement the yeast cdc42-1 mutant. The product of oncogene Dbl was reported to specifically catalyze the dissociation of GDP from this protein. This protein could regulate actin polymerization through its direct binding to Neural Wiskott-Aldrich syndrome protein (N-WASP), which subsequently activates Arp2/3 complex. Alternative splicing of this gene results in multiple transcript variants. Pseudogenes of this gene have been identified on chromosomes 3, 4, 5, 7, 8 and 20. [provided by RefSeq, Apr 2013]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtTakenouchi-Kosaki syndrome

Clinical highlights

Gene-disease validity (ClinGen)
macrothrombocytopenia-lymphedema-developmental delay-facial dysmorphism-camptodactyly syndrome · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
421
Pubs (1 yr)
P/LP submissions
P/LP missense
0.50
LOEUF
Multiple*
Mechanism· predicted
📖
GeneReview available — CDC42
Authoritative clinical overview · Recommended first read
Open GeneReview ↗
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.50LOEUF
pLI 0.787
Z-score 2.55
OE 0.11 (0.040.50)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
3.04Z-score
OE missense 0.16 (0.110.24)
17 obs / 104.3 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.11 (0.040.50)
00.351.4
Missense OE?0.16 (0.110.24)
00.61.4
Synonymous OE?1.12
01.21.6
LoF obs/exp: 1 / 9.5Missense obs/exp: 17 / 104.3Syn Z: -0.61

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CDC42 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.