CD93

Chr 20

CD93 molecule

Also known as: C1QR1, C1qR(P), C1qRP, CDw93, ECSM3, MXRA4, dJ737E23.1

CD93 encodes a cell surface glycoprotein that functions as a receptor for defense collagens and extracellular matrix proteins, regulating phagocytosis of apoptotic cells, endothelial cell adhesion, and angiogenesis. Mutations cause autosomal recessive deficiency of complement component C4, leading to increased susceptibility to infections and potential autoimmune manifestations. The gene shows minimal constraint against loss-of-function variants (pLI near zero), consistent with recessive inheritance requiring biallelic mutations for disease manifestation.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
40
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.24
LOEUF
GOF
Mechanism· predicted
Clinical SummaryCD93
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.24LOEUF
pLI 0.000
Z-score 0.74
OE 0.82 (0.561.24)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.35Z-score
OE missense 1.05 (0.971.14)
413 obs / 393.4 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.82 (0.561.24)
00.351.4
Missense OE1.05 (0.971.14)
00.61.4
Synonymous OE1.13
01.21.6
LoF obs/exp: 17 / 20.6Missense obs/exp: 413 / 393.4Syn Z: -1.38
DN
0.5673th %ile
GOF
0.6930th %ile
LOF
0.3551th %ile

The highest-scoring mechanism for this gene is gain-of-function.

GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CD93 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →