CD47

Chr 3

CD47 molecule

Also known as: IAP, MER6, OA3

This gene encodes a membrane protein, which is involved in the increase in intracellular calcium concentration that occurs upon cell adhesion to extracellular matrix. The encoded protein is also a receptor for the C-terminal cell binding domain of thrombospondin, and it may play a role in membrane transport and signal transduction. This gene has broad tissue distribution, and is reduced in expression on Rh erythrocytes. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2010]

GeneReviewsOMIMResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
808
Pubs (1 yr)
P/LP submissions
P/LP missense
0.37
LOEUF
Multiple*
Mechanism· predicted
📖
GeneReview available — CD47
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.37LOEUF
pLI 0.919
Z-score 3.36
OE 0.12 (0.050.37)
Highly constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.43Z-score
OE missense 0.68 (0.580.80)
108 obs / 158.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.12 (0.050.37)
00.351.4
Missense OE?0.68 (0.580.80)
00.61.4
Synonymous OE?1.03
01.21.6
LoF obs/exp: 2 / 16.9Missense obs/exp: 108 / 158.7Syn Z: -0.18

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CD47 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.