CD2AP

Chr 6

CD2 associated protein

Also known as: CMS

This gene encodes a scaffolding molecule that regulates the actin cytoskeleton. The protein directly interacts with filamentous actin and a variety of cell membrane proteins through multiple actin binding sites, SH3 domains, and a proline-rich region containing binding sites for SH3 domains. The cytoplasmic protein localizes to membrane ruffles, lipid rafts, and the leading edges of cells. It is implicated in dynamic actin remodeling and membrane trafficking that occurs during receptor endocytosis and cytokinesis. Haploinsufficiency of this gene is implicated in susceptibility to glomerular disease. [provided by RefSeq, Jul 2008]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtFocal segmental glomerulosclerosis 3

Clinical highlights

Gene-disease validity (ClinGen)
focal segmental glomerulosclerosis 3, susceptibility to · ARDefinitivesufficient evidence for diagnostic panels2 gene-disease associations curated in total
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
59
Pubs (1 yr)
P/LP submissions
P/LP missense
0.41
LOEUF
DN
Mechanism· predicted
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.41LOEUF
pLI 0.230
Z-score 4.36
OE 0.24 (0.140.41)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
0.00Z-score
OE missense 1.00 (0.911.10)
323 obs / 323.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.24 (0.140.41)
00.351.4
Missense OE?1.00 (0.911.10)
00.61.4
Synonymous OE?1.07
01.21.6
LoF obs/exp: 9 / 38.0Missense obs/exp: 323 / 323.1Syn Z: -0.61

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CD2AP · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.