CCNE2

Chr 8

cyclin E2

Also known as: CYCE2

Cyclin E2 functions as a regulatory subunit of CDK2 kinase and is essential for cell cycle control at the late G1 and early S phase transition. Mutations cause autosomal dominant megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome, characterized by brain malformations and developmental anomalies typically apparent in early infancy. The gene is highly constrained against loss-of-function variants, indicating that such mutations are likely to have significant clinical consequences.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
32
Pubs (1 yr)
39
P/LP submissions
0%
P/LP missense
0.38
LOEUF
Mechanism
Clinical SummaryCCNE2
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.87) — some intolerance to loss-of-function variants.
📋
ClinVar Variants
39 unique Pathogenic / Likely Pathogenic· 37 VUS of 88 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.38LOEUF
pLI 0.870
Z-score 3.81
OE 0.16 (0.080.38)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.50Z-score
OE missense 0.70 (0.610.81)
140 obs / 199.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.16 (0.080.38)
00.351.4
Missense OE0.70 (0.610.81)
00.61.4
Synonymous OE0.86
01.21.6
LoF obs/exp: 4 / 24.3Missense obs/exp: 140 / 199.7Syn Z: 0.88

ClinVar Variant Classifications

88 submitted variants in ClinVar

Classification Summary

Pathogenic37
Likely Pathogenic2
VUS37
Likely Benign2
37
Pathogenic
2
Likely Pathogenic
37
VUS
2
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
37
0
37
Likely Pathogenic
0
0
2
0
2
VUS
0
35
2
0
37
Likely Benign
0
2
0
0
2
Benign
0
0
0
0
0
Total03741078

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

CCNE2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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