CCN1

Chr 1

cellular communication network factor 1

Also known as: CYR61, GIG1, IBP-10, IGFBP-10, IGFBP10

The secreted protein encoded by this gene is growth factor-inducible and promotes the adhesion of endothelial cells. The encoded protein interacts with several integrins and with heparan sulfate proteoglycan. This protein also plays a role in cell proliferation, differentiation, angiogenesis, apoptosis, and extracellular matrix formation. [provided by RefSeq, Sep 2011]

OMIMResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
98
Pubs (1 yr)
P/LP submissions
P/LP missense
0.45
LOEUF
DN
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.45LOEUF
pLI 0.714
Z-score 3.18
OE 0.17 (0.080.45)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
0.37Z-score
OE missense 0.93 (0.831.04)
201 obs / 216.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.17 (0.080.45)
00.351.4
Missense OE?0.93 (0.831.04)
00.61.4
Synonymous OE?0.93
01.21.6
LoF obs/exp: 3 / 17.2Missense obs/exp: 201 / 216.2Syn Z: 0.50

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CCN1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.