CCM2L

Chr 20

CCM2 like scaffold protein

Also known as: C20orf160, dJ310O13.5

The CCM2L protein is predicted to regulate heart development, cell-cell adhesion, and fibroblast growth factor production. The gene shows minimal constraint against loss-of-function variants, and currently no definitive human disease associations have been established for CCM2L mutations. Given the predicted cardiac developmental role, mutations would potentially affect cardiovascular and possibly other developmental processes.

Summary from RefSeq
Research Assistant →
0
Active trials
1
Pubs (1 yr)
15
P/LP submissions
0%
P/LP missense
1.10
LOEUF
Mechanism
Clinical SummaryCCM2L
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
15 unique Pathogenic / Likely Pathogenic· 69 VUS of 92 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.10LOEUF
pLI 0.000
Z-score 1.25
OE 0.68 (0.431.10)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.91Z-score
OE missense 0.81 (0.710.93)
151 obs / 185.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.68 (0.431.10)
00.351.4
Missense OE0.81 (0.710.93)
00.61.4
Synonymous OE0.90
01.21.6
LoF obs/exp: 12 / 17.6Missense obs/exp: 151 / 185.9Syn Z: 0.69

ClinVar Variant Classifications

92 submitted variants in ClinVar

Classification Summary

Pathogenic10
Likely Pathogenic5
VUS69
10
Pathogenic
5
Likely Pathogenic
69
VUS

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
10
0
10
Likely Pathogenic
0
0
5
0
5
VUS
0
62
7
0
69
Likely Benign
0
0
0
0
0
Benign
0
0
0
0
0
Total06222084

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

CCM2L · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗