CCL15

Chr 17

C-C motif chemokine ligand 15

Also known as: HCC-2, HMRP-2B, LKN-1, LKN1, MIP-1 delta, MIP-1D, MIP-5, MRP-2B

The protein functions as a chemotactic factor that attracts T-cells and monocytes through CC chemokine receptor CCR1 and CCR3. No specific pediatric neurological diseases have been definitively associated with CCL15 mutations, though the predicted dominant-negative mechanism suggests potential loss-of-function effects. The gene shows moderate tolerance to loss-of-function variants based on constraint metrics.

Summary from RefSeq, UniProt, Mechanism
0
Active trials
13
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.08
LOEUF
DN
Mechanism· predicted
Clinical SummaryCCL15
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.23) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.08LOEUF
pLI 0.333
Z-score 1.49
OE 0.23 (0.081.08)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.23Z-score
OE missense 0.92 (0.741.14)
58 obs / 63.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.23 (0.081.08)
00.351.4
Missense OE0.92 (0.741.14)
00.61.4
Synonymous OE1.20
01.21.6
LoF obs/exp: 1 / 4.3Missense obs/exp: 58 / 63.1Syn Z: -0.78
DN
0.85top 5%
GOF
0.5563th %ile
LOF
0.1499th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CCL15 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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