CCDC40

Chr 17AR

coiled-coil domain 40 molecular ruler complex subunit

Also known as: CFAP172, CILD15, FAP172

This gene encodes a protein that is necessary for motile cilia function. It functions in correct left-right axis formation by regulating the assembly of the inner dynein arm and the dynein regulatory complexes, which control ciliary beat. Mutations in this gene cause ciliary dyskinesia type 15, a disorder due to defects in cilia motility. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2011]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Ciliary dyskinesia, primary, 15MIM #613808
AR

Clinical highlights

Gene-disease validity (ClinGen)
primary ciliary dyskinesia 15 · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
15
Pubs (1 yr)
P/LP submissions
P/LP missense
0.84
LOEUF
LOF
Mechanism· G2P
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GeneReview available — CCDC40
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.84LOEUF
pLI 0.000
Z-score 2.49
OE 0.64 (0.490.84)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-0.18Z-score
OE missense 1.02 (0.961.09)
680 obs / 666.9 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.64 (0.490.84)
00.351.4
Missense OE?1.02 (0.961.09)
00.61.4
Synonymous OE?0.98
01.21.6
LoF obs/exp: 35 / 54.9Missense obs/exp: 680 / 666.9Syn Z: 0.28

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CCDC40 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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