CCDC17

Chr 1

coiled-coil domain containing 17

The CCDC17 protein's specific function is not well characterized based on the available data. Mutations in this gene have been implicated in colorectal adenocarcinoma, though the neurological phenotypes associated with CCDC17 variants are not defined in the provided information. The gene shows tolerance to loss-of-function variants with very low constraint metrics.

ResearchSummary from RefSeq
LOEUF 1.41
Clinical SummaryCCDC17
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
6 unique Pathogenic / Likely Pathogenic· 126 VUS of 155 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.41LOEUF
pLI 0.000
Z-score -0.23
OE 1.05 (0.791.41)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
1.14Z-score
OE missense 0.83 (0.760.92)
315 obs / 377.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE1.05 (0.791.41)
00.351.4
Missense OE0.83 (0.760.92)
00.61.4
Synonymous OE0.94
01.21.6
LoF obs/exp: 32 / 30.6Missense obs/exp: 315 / 377.4Syn Z: 0.58

ClinVar Variant Classifications

155 submitted variants in ClinVar

Classification Summary

Pathogenic4
Likely Pathogenic2
VUS126
Likely Benign6
Benign1
4
Pathogenic
2
Likely Pathogenic
126
VUS
6
Likely Benign
1
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
4
0
4
Likely Pathogenic
0
0
2
0
2
VUS
0
111
15
0
126
Likely Benign
0
4
2
0
6
Benign
0
1
0
0
1
Total0116230139

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

CCDC17 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 2 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found