CARS1

Chr 11AR

cysteinyl-tRNA synthetase 1

Also known as: CARS, CYSRS, MCDDBH, MDBH, MGC:11246

This gene encodes a class 1 aminoacyl-tRNA synthetase, cysteinyl-tRNA synthetase. Each of the twenty aminoacyl-tRNA synthetases catalyzes the aminoacylation of a specific tRNA or tRNA isoaccepting family with the cognate amino acid. This gene is one of several located near the imprinted gene domain on chromosome 11p15.5, an important tumor-suppressor gene region. Alterations in this region have been associated with Beckwith-Wiedemann syndrome, Wilms tumor, rhabdomyosarcoma, adrenocortical carcinoma, and lung, ovarian and breast cancers. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Aug 2010]

Primary Disease Associations & Inheritance

Microcephaly, developmental delay, and brittle hair syndromeMIM #618891
AR
0
Active trials
0
Pathogenic / LP
0
ClinVar variants
10
Pubs (1 yr)
1.2
Missense Z
0.49
LOEUF
Clinical SummaryCARS1
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.32) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.49LOEUF
pLI 0.000
Z-score 4.31
OE 0.32 (0.210.49)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.20Z-score
OE missense 0.85 (0.780.92)
411 obs / 485.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.32 (0.210.49)
00.351.4
Missense OE0.85 (0.780.92)
00.61.4
Synonymous OE0.97
01.21.6
LoF obs/exp: 15 / 46.8Missense obs/exp: 411 / 485.1Syn Z: 0.30
DN
DN
0.6454th %ile
GOF
0.5661th %ile
LOF
0.3552th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

CARS1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Gene2Phenotype Curations

CARS1-related microcephaly, developmental delay, and brittle hair and nails

strong
ARLoss Of FunctionAbsent Gene Product
Dev. DisordersSkin
G2P ↗

Gene2Phenotype curations · DECIPHER consortium patient cohort (public variants) · deciphergenomics.org

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Landmark / reviewRecent case evidence
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC