CALM2

Chr 2AD

calmodulin 2

Also known as: CALM, CALML2, CAM1, CAM3, CAMC, CAMII, CAMIII, LQT15

This gene is a member of the calmodulin gene family. There are three distinct calmodulin genes dispersed throughout the genome that encode the identical protein, but differ at the nucleotide level. Calmodulin is a calcium binding protein that plays a role in signaling pathways, cell cycle progression and proliferation. Several infants with severe forms of long-QT syndrome (LQTS) who displayed life-threatening ventricular arrhythmias together with delayed neurodevelopment and epilepsy were found to have mutations in either this gene or another member of the calmodulin gene family (PMID:23388215). Mutations in this gene have also been identified in patients with less severe forms of LQTS (PMID:24917665), while mutations in another calmodulin gene family member have been associated with catecholaminergic polymorphic ventricular tachycardia (CPVT)(PMID:23040497), a rare disorder thought to be the cause of a significant fraction of sudden cardiac deaths in young individuals. Pseudogenes of this gene are found on chromosomes 10, 13, and 17. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Mar 2015]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Long QT syndrome 15MIM #616249
AD

Clinical highlights

Gene-disease validity (ClinGen)
catecholaminergic polymorphic ventricular tachycardia · ADModerateconsider for supplementary testing2 gene-disease associations curated in total
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
29
Pubs (1 yr)
P/LP submissions
P/LP missense
0.37
LOEUF
Multiple*
Mechanism· predicted
📖
GeneReview available — CALM2
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.37LOEUF
pLI 0.921
Z-score 2.64
OE 0.00 (0.000.37)
Highly constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.79Z-score
OE missense 0.10 (0.060.19)
8 obs / 76.9 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.00 (0.000.37)
00.351.4
Missense OE?0.10 (0.060.19)
00.61.4
Synonymous OE?0.93
01.21.6
LoF obs/exp: 0 / 8.1Missense obs/exp: 8 / 76.9Syn Z: 0.26

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CALM2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.