CADM2

Chr 3

cell adhesion molecule 2

Also known as: IGSF4D, NECL3, Necl-3, SynCAM 2, SynCAM-2, synCAM2

This gene encodes a member of the synaptic cell adhesion molecule 1 (SynCAM) family which belongs to the immunoglobulin (Ig) superfamily. The encoded protein has three Ig-like domains and a cytosolic protein 4.1 binding site near the C-terminus. Proteins belonging to the protein 4.1 family crosslink spectrin and interact with other cytoskeletal proteins. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2012]

ResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
20
Pubs (1 yr)
P/LP submissions
P/LP missense
0.38
LOEUF
Mechanism
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.38LOEUF
pLI 0.891
Z-score 3.57
OE 0.15 (0.070.38)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.98Z-score
OE missense 0.64 (0.560.73)
151 obs / 236.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.15 (0.070.38)
00.351.4
Missense OE?0.64 (0.560.73)
00.61.4
Synonymous OE?1.22
01.21.6
LoF obs/exp: 3 / 20.4Missense obs/exp: 151 / 236.6Syn Z: -1.60

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CADM2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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