C9ORF47

Chr 9

chromosome 9 open reading frame 47

Also known as: C9orf108, bA791O21.3

The protein encoded by this gene functions as a receptor for sphingosine 1-phosphate (S1P), a bioactive lysophospholipid that mediates cell proliferation and suppression of apoptosis. No disease associations have been established for mutations in C9ORF47. The gene appears tolerant to loss-of-function mutations based on population genetic data.

Summary from UniProt
0
Active trials
0
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.77
LOEUF
Mechanism
Clinical SummaryC9ORF47
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
Some data sources returned errors (1)

ensembl: Error: Ensembl fetch failed: 400 for https://rest.ensembl.org/lookup/symbol/homo_sapiens/C9ORF47?content-type=application/json&expand=1

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.77LOEUF
pLI 0.000
Z-score 0.02
OE 0.99 (0.541.77)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.35Z-score
OE missense 1.10 (0.941.28)
119 obs / 108.6 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.99 (0.541.77)
00.351.4
Missense OE1.10 (0.941.28)
00.61.4
Synonymous OE1.00
01.21.6
LoF obs/exp: 6 / 6.0Missense obs/exp: 119 / 108.6Syn Z: 0.00

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

C9ORF47 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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