C5ORF46

Chr 5

chromosome 5 open reading frame 46

Also known as: AP-64, SSSP1

Located in extracellular exosome. [provided by Alliance of Genome Resources, Jul 2025]

0
Active trials
14
Pathogenic / LP
20
ClinVar variants
0
Pubs (1 yr)
0.3
Missense Z
1.47
LOEUF
Clinical SummaryC5ORF46
Population Constraint (gnomAD)
Low constraint (pLI 0.07) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
14 Pathogenic / Likely Pathogenic· 4 VUS of 20 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.47LOEUF
pLI 0.072
Z-score 0.96
OE 0.49 (0.201.47)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.33Z-score
OE missense 0.87 (0.681.12)
42 obs / 48.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.49 (0.201.47)
00.351.4
Missense OE0.87 (0.681.12)
00.61.4
Synonymous OE1.32
01.21.6
LoF obs/exp: 2 / 4.1Missense obs/exp: 42 / 48.4Syn Z: -1.13

ClinVar Variant Classifications

20 submitted variants in ClinVar

Classification Summary

Pathogenic14
VUS4
Likely Benign2
14
Pathogenic
4
VUS
2
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories· variant type breakdown unavailable

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
14
Likely Pathogenic
0
VUS
4
Likely Benign
2
Benign
0
Total20

Counts from ClinVar esearch · Updated hourly

View in ClinVar →

C5ORF46 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Landmark / reviewRecent case evidence
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC