C1ORF52

Chr 1

chromosome 1 open reading frame 52

Also known as: gm117

C1ORF52 encodes a protein that enables RNA binding activity and is located in the nucleoplasm. The gene shows low constraint against loss-of-function variants (pLI = 0.05, LOEUF = 1.10), suggesting tolerance to complete loss of gene function. Based on current databases, no specific diseases have been definitively associated with mutations in this gene.

Summary from RefSeq
Research Assistant →
0
Active trials
0
Pubs (1 yr)
17
P/LP submissions
P/LP missense
1.10
LOEUF
Mechanism
Clinical SummaryC1ORF52
Population Constraint (gnomAD)
Low constraint (pLI 0.05) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
17 unique Pathogenic / Likely Pathogenic· 2 VUS of 21 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.10LOEUF
pLI 0.047
Z-score 1.40
OE 0.43 (0.191.10)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.12Z-score
OE missense 1.03 (0.881.21)
108 obs / 104.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.43 (0.191.10)
00.351.4
Missense OE1.03 (0.881.21)
00.61.4
Synonymous OE1.29
01.21.6
LoF obs/exp: 3 / 7.0Missense obs/exp: 108 / 104.5Syn Z: -1.43

ClinVar Variant Classifications

21 submitted variants in ClinVar

Classification Summary

Pathogenic14
Likely Pathogenic3
VUS2
14
Pathogenic
3
Likely Pathogenic
2
VUS

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories· variant type breakdown unavailable

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
14
Likely Pathogenic
3
VUS
2
Likely Benign
0
Benign
0
Total19

Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

C1ORF52 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found