C16ORF46

Chr 16

chromosome 16 open reading frame 46

Located in cytosol and nucleoplasm. [provided by Alliance of Genome Resources, Jul 2025]

ResearchGenerating clinical summary…
LOEUF 1.63
Clinical SummaryC16ORF46
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
5 VUS of 23 total submissions
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.63LOEUF
pLI 0.000
Z-score 0.00
OE 1.00 (0.631.63)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-1.42Z-score
OE missense 1.28 (1.151.41)
268 obs / 210.2 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?1.00 (0.631.63)
00.351.4
Missense OE?1.28 (1.151.41)
00.61.4
Synonymous OE?1.02
01.21.6
LoF obs/exp: 11 / 11.0Missense obs/exp: 268 / 210.2Syn Z: -0.17

ClinVar Variant Classifications

23 submitted variants in ClinVar

Classification Summary

VUS5
5
VUS

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
0
0
0
Likely Pathogenic
0
0
0
0
0
VUS
0
5
0
0
5
Likely Benign
0
0
0
0
0
Benign
0
0
0
0
0
Total05005

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

42 pathogenic / likely-pathogenic (of 73) ClinVar copy-number / structural variants overlap C16ORF46 — these span large chromosomal regions, not the gene specifically, and are excluded from the counts above. Explore in CNV tools →

Protein Context — Lollipop Plot

C16ORF46 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →