BMI1

Chr 10

BMI1 proto-oncogene, polycomb ring finger

Also known as: FLVI2/BMI1, PCGF4, RNF51, flvi-2/bmi-1

This protein is a core component of the polycomb repressive complex 1 (PRC1) that maintains transcriptional silencing of developmental genes through chromatin remodeling and histone modification, particularly monoubiquitination of histone H2A. Mutations cause autosomal dominant primary microcephaly with early-onset seizures and developmental delay, reflecting the gene's critical role in neurodevelopment. The gene is highly constrained against loss-of-function variants (pLI = 0.94), consistent with the severe neurological phenotype observed in affected patients.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
98
Pubs (1 yr)
0
P/LP submissions
P/LP missense
0.35
LOEUF
LOF
Mechanism· predicted
Clinical SummaryBMI1
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.94). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.35LOEUF
pLI 0.943
Z-score 3.48
OE 0.11 (0.040.35)
Highly constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
2.43Z-score
OE missense 0.48 (0.400.58)
84 obs / 174.3 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios
LoF OE0.11 (0.040.35)
00.351.4
Missense OE0.48 (0.400.58)
00.61.4
Synonymous OE1.07
01.21.6
LoF obs/exp: 2 / 17.9Missense obs/exp: 84 / 174.3Syn Z: -0.42
DN
0.4090th %ile
GOF
0.3788th %ile
LOF
0.75top 10%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.35

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

BMI1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →