BMERB1

Chr 16

bMERB domain containing 1

Also known as: C16orf45, MINP

The protein is predicted to negatively regulate microtubule depolymerization and control cell motility during cerebral cortex radial glia guided migration within the microtubule cytoskeleton. Mutations in BMERB1 have not been definitively associated with human disease, as this appears to be a predicted gene with limited functional validation. The gene shows relatively low constraint to loss-of-function variants based on population genetics data.

ResearchSummary from RefSeq
MultiplemechanismLOEUF 0.78
Clinical SummaryBMERB1
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.30) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.78LOEUF
pLI 0.137
Z-score 2.03
OE 0.30 (0.140.78)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.41Z-score
OE missense 0.89 (0.761.05)
105 obs / 117.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.30 (0.140.78)
00.351.4
Missense OE0.89 (0.761.05)
00.61.4
Synonymous OE1.12
01.21.6
LoF obs/exp: 3 / 9.9Missense obs/exp: 105 / 117.5Syn Z: -0.62
DN
0.73top 25%
GOF
0.7027th %ile
LOF
0.3066th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

BMERB1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
Open Research Assistant →
Full-Text Mentions
NLP-detected gene mentions in article bodies · via PubTator3
PubTator3
Top 5 full-text resultsSearch PubTator3 ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found