BMAL2

Chr 12

basic helix-loop-helix ARNT like 2

Also known as: ARNTL2, CLIF, MOP9, PASD9, bHLHe6

The protein is a transcription factor that forms heterodimers with CLOCK and other circadian proteins to regulate circadian rhythms and the molecular clock mechanism throughout the brain and peripheral tissues. BMAL2 is highly tolerant to loss-of-function variants based on population genetics data, and no definitive human disease associations have been established for this gene. The inheritance pattern for any potential BMAL2-related disorder would likely be autosomal recessive given the gene's tolerance to heterozygous loss-of-function mutations.

Summary from RefSeq, UniProt
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0
Active trials
5
Pubs (1 yr)
0
P/LP submissions
P/LP missense
0.88
LOEUF
LOF
Mechanism· predicted
Clinical SummaryBMAL2
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.88LOEUF
pLI 0.000
Z-score 2.11
OE 0.60 (0.420.88)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.39Z-score
OE missense 0.94 (0.851.03)
306 obs / 325.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.60 (0.420.88)
00.351.4
Missense OE0.94 (0.851.03)
00.61.4
Synonymous OE0.86
01.21.6
LoF obs/exp: 20 / 33.1Missense obs/exp: 306 / 325.8Syn Z: 1.15
DN
0.5673th %ile
GOF
0.3788th %ile
LOF
0.70top 10%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

BMAL2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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