BLNK

Chr 10

B cell linker

Also known as: AGM4, BASH, BLNK-S, LY57, SLP-65, SLP65, bca

This gene encodes a cytoplasmic linker or adaptor protein that plays a critical role in B cell development. This protein bridges B cell receptor-associated kinase activation with downstream signaling pathways, thereby affecting various biological functions. The phosphorylation of five tyrosine residues is necessary for this protein to nucleate distinct signaling effectors following B cell receptor activation. Mutations in this gene cause hypoglobulinemia and absent B cells, a disease in which the pro- to pre-B-cell transition is developmentally blocked. Deficiency in this protein has also been shown in some cases of pre-B acute lymphoblastic leukemia. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, May 2012]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtAgammaglobulinemia 4, autosomal recessive

Clinical highlights

Gene-disease validity (ClinGen)
agammaglobulinemia 4, autosomal recessive · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
18
Pubs (1 yr)
P/LP submissions
P/LP missense
0.39
LOEUF
Mechanism
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.39LOEUF
pLI 0.611
Z-score 4.25
OE 0.21 (0.120.39)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.50Z-score
OE missense 0.73 (0.650.83)
183 obs / 249.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.21 (0.120.39)
00.351.4
Missense OE?0.73 (0.650.83)
00.61.4
Synonymous OE?1.02
01.21.6
LoF obs/exp: 7 / 33.6Missense obs/exp: 183 / 249.8Syn Z: -0.18

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

BLNK · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.