BICD2

Chr 9AD

BICD cargo adaptor 2

Also known as: SMALED2, SMALED2A, SMALED2B, bA526D8.1

The protein mediates dynein-mediated transport along microtubules toward the minus end and functions at the Golgi apparatus. Loss-of-function mutations cause autosomal dominant spinal muscular atrophy, lower extremity-predominant types 2A and 2B. The high pLI score (0.98) indicates this gene is highly intolerant to loss-of-function variants, consistent with the dominant inheritance pattern where haploinsufficiency drives pathogenicity.

OMIMResearchSummary from RefSeq, OMIM, UniProt, Mechanism
MultiplemechanismADLOEUF 0.302 OMIM phenotypes
Clinical SummaryBICD2
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.98). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.30LOEUF
pLI 0.983
Z-score 4.40
OE 0.13 (0.070.30)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
2.20Z-score
OE missense 0.74 (0.680.80)
414 obs / 561.0 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios
LoF OE0.13 (0.070.30)
00.351.4
Missense OE0.74 (0.680.80)
00.61.4
Synonymous OE1.04
01.21.6
LoF obs/exp: 4 / 30.0Missense obs/exp: 414 / 561.0Syn Z: -0.45
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveBICD2-related proximal spinal muscular atrophy with brain anomaliesOTHERAD
DN
0.5771th %ile
GOF
0.4874th %ile
LOF
0.66top 25%

This gene has evidence for multiple mechanisms of pathogenicity (loss-of-function and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to loss-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

LOFprediction above median · LOEUF 0.30
GOF1 literature citation

Literature Evidence

GOFHere, using biochemical and single-molecule motility assays, we demonstrate that BICD2 disease mutations cause a gain of function in the motility of DDB complexes both in vitro and in cells.PMID:28883039

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

BICD2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →