BEND7

Chr 10

BEN domain containing 7

Also known as: C10orf30

BEND7 encodes a protein predicted to bind DNA, though its specific cellular function remains unclear. Mutations in BEND7 have not been definitively associated with human disease. The gene shows low constraint against loss-of-function variants, suggesting that complete loss of BEND7 function may be tolerated.

Summary from RefSeq
Research Assistant →
0
Active trials
2
Pubs (1 yr)
19
P/LP submissions
0%
P/LP missense
0.70
LOEUF
DN
Mechanism· predicted
Clinical SummaryBEND7
Population Constraint (gnomAD)
Low constraint (pLI 0.01) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
19 unique Pathogenic / Likely Pathogenic· 64 VUS of 100 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.70LOEUF
pLI 0.006
Z-score 2.52
OE 0.37 (0.210.70)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.65Z-score
OE missense 0.89 (0.800.99)
232 obs / 261.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.37 (0.210.70)
00.351.4
Missense OE0.89 (0.800.99)
00.61.4
Synonymous OE1.12
01.21.6
LoF obs/exp: 7 / 18.8Missense obs/exp: 232 / 261.5Syn Z: -0.93
DN
0.6840th %ile
GOF
0.4972th %ile
LOF
0.3843th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

100 submitted variants in ClinVar

Classification Summary

Pathogenic18
Likely Pathogenic1
VUS64
Likely Benign3
Benign1
18
Pathogenic
1
Likely Pathogenic
64
VUS
3
Likely Benign
1
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
18
0
18
Likely Pathogenic
0
0
1
0
1
VUS
0
60
4
0
64
Likely Benign
0
3
0
0
3
Benign
0
0
1
0
1
Total06324087

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

BEND7 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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