BBS2

Chr 16AR

Bardet-Biedl syndrome 2

The protein encoded by this gene is a component of the BBSome complex, which functions as a coat complex that sorts specific membrane proteins to primary cilia and is required for ciliogenesis and ciliary membrane extension. Mutations cause Bardet-Biedl syndrome, an autosomal recessive disorder characterized by severe pigmentary retinopathy, obesity, polydactyly, renal malformation, and cognitive disability, as well as retinitis pigmentosa. The gene shows minimal constraint against loss-of-function variants (pLI near zero, LOEUF >1), consistent with its recessive inheritance pattern where heterozygous carriers are typically unaffected.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismARLOEUF 1.073 OMIM phenotypes
Clinical SummaryBBS2
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Gene-Disease Validity (ClinGen)
BBS2-related ciliopathy · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
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ClinVar Variants
28 unique Pathogenic / Likely Pathogenic· 55 VUS of 100 total submissions
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Clinical Trials
1 active or recruiting trial — potential therapeutic options may be available
Some data sources returned errors (1)

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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.07LOEUF
pLI 0.000
Z-score 1.22
OE 0.79 (0.591.07)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.87Z-score
OE missense 0.88 (0.800.96)
351 obs / 400.0 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.79 (0.591.07)
00.351.4
Missense OE0.88 (0.800.96)
00.61.4
Synonymous OE0.97
01.21.6
LoF obs/exp: 31 / 39.3Missense obs/exp: 351 / 400.0Syn Z: 0.24

ClinVar Variant Classifications

100 submitted variants in ClinVar

Classification Summary

Pathogenic4
Likely Pathogenic24
VUS55
Likely Benign7
Conflicting10
4
Pathogenic
24
Likely Pathogenic
55
VUS
7
Likely Benign
10
Conflicting

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
4
0
0
0
4
Likely Pathogenic
22
1
0
1
24
VUS
1
47
7
0
55
Likely Benign
0
1
2
4
7
Benign
0
0
0
0
0
Conflicting
10
Total274995100

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

BBS2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold
Clinical Literature
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