BAMBI

Chr 10

BMP and activin membrane bound inhibitor

Also known as: NMA

The protein negatively regulates TGF-beta signaling by functioning as a pseudoreceptor that lacks the intracellular kinase domain required for signal transduction. Mutations cause autosomal recessive microcephaly, seizures, and developmental delay with onset in early infancy. This gene is loss-of-function tolerant, which is consistent with its recessive inheritance pattern.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
34
Pubs (1 yr)
15
P/LP submissions
0%
P/LP missense
1.24
LOEUF
DN
Mechanism· predicted
Clinical SummaryBAMBI
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
15 unique Pathogenic / Likely Pathogenic· 39 VUS of 63 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.24LOEUF
pLI 0.000
Z-score 1.02
OE 0.66 (0.381.24)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.10Z-score
OE missense 1.02 (0.901.17)
150 obs / 146.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.66 (0.381.24)
00.351.4
Missense OE1.02 (0.901.17)
00.61.4
Synonymous OE1.09
01.21.6
LoF obs/exp: 7 / 10.6Missense obs/exp: 150 / 146.5Syn Z: -0.54
DN
0.6355th %ile
GOF
0.6149th %ile
LOF
0.4135th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

63 submitted variants in ClinVar

Classification Summary

Pathogenic14
Likely Pathogenic1
VUS39
Likely Benign2
Benign2
14
Pathogenic
1
Likely Pathogenic
39
VUS
2
Likely Benign
2
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
14
0
14
Likely Pathogenic
0
0
1
0
1
VUS
0
38
1
0
39
Likely Benign
0
1
0
1
2
Benign
0
0
1
1
2
Total03917258

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

BAMBI · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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