B3GALNT2

Chr 1AR

beta-1,3-N-acetylgalactosaminyltransferase 2

Also known as: B3GalNAc-T2, MDDGA11

This gene encodes a member of the glycosyltransferase 31 family. The encoded protein synthesizes GalNAc:beta-1,3GlcNAc, a novel carbohydrate structure, on N- and O-glycans. Alternatively spliced transcript variants that encode different isoforms have been described. [provided by RefSeq, Mar 2013]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 11MIM #615181
AR

Clinical highlights

Gene-disease validity (ClinGen)
muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11 · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
6
Pubs (1 yr)
P/LP submissions
P/LP missense
0.84
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.84LOEUF
pLI 0.000
Z-score 2.20
OE 0.55 (0.360.84)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.95Z-score
OE missense 0.84 (0.750.93)
222 obs / 265.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.55 (0.360.84)
00.351.4
Missense OE?0.84 (0.750.93)
00.61.4
Synonymous OE?0.91
01.21.6
LoF obs/exp: 15 / 27.4Missense obs/exp: 222 / 265.6Syn Z: 0.72

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

B3GALNT2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.