ATXN3

Chr 14ADMulti

ataxin 3

Also known as: AT3, ATX3, JOS, MJD, MJD1, SCA3

Spinocerebellar ataxia type 3 (Machado–Joseph disease) is caused by an expanded CAG repeat in ATXN3: 44 or fewer is normal, 45–59 intermediate and rarely seen, and about 60–87 pathogenic, with some laboratories using 52. No disease-modifying treatment is approved.

GeneReviewsOMIMResearchCurated summary · ACMG points to consider 2026, Lian 2024, Nethisinghe 2025

Primary Disease Associations & Inheritance

{Parkinson disease, late-onset, susceptibility to}MIM #168600
ADMulti
Machado-Joseph diseaseMIM #109150
AD
UniProtSpinocerebellar ataxia 3

Clinical highlights

Gene–disease validity (ClinGen · GenCC)
  • Definitive · Machado-Joseph disease · AD · Laboratory for Molecular Medicine
  • Supportive · Machado-Joseph disease type 1 · AD · Orphanet
  • Supportive · Machado-Joseph disease type 2 · AD · Orphanet
  • Supportive · Machado-Joseph disease type 3 · AD · Orphanet
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
82
Pubs (1 yr)
—
P/LP submissions
—
P/LP missense
—
LOEUF · n/a
Multiple*
Mechanism· predicted
📖
GeneReview available — ATXN3
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

SCA3 (Machado–Joseph disease): a CAG repeat in ATXN3

CAG repeat in exon 10 (a polyglutamine tract) — the cause of spinocerebellar ataxia type 3 / Machado–Joseph disease. What matters is the number of repeats.

4560CAG repeats →
  • Normal · ≤44
  • Intermediate · 45–59 — unstable, incomplete penetrance; rarely seen
  • Pathogenic · about 60–87 (some laboratories call 52 or more pathogenic)

In a UK series of 6,596 alleles no intermediate allele (41–57) was seen, and expanded alleles ran from 58 to 91 — so the boundaries differ slightly between sources.

Testing: Sequencing does not size this repeat; order the SCA3 repeat test.

Sources: ACMG points to consider 2026 (Table 1); Lian 2024; Nethisinghe 2025.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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