ATXN2L

Chr 16

ataxin 2 like

Also known as: A2D, A2LG, A2LP, A2RP

The protein regulates stress granule and P-body formation, which are cellular structures involved in RNA metabolism and stress response. This gene is extremely intolerant to loss-of-function variants (pLI ~1.0, LOEUF 0.143), suggesting that mutations would likely cause severe developmental consequences, though specific disease associations have not yet been established in humans. The protein belongs to the spinocerebellar ataxia family, indicating potential involvement in neurodegenerative processes affecting cerebellar function.

OMIMResearchSummary from RefSeq, UniProt
LOFmechanismLOEUF 0.14
Clinical SummaryATXN2L
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.14LOEUF
pLI 1.000
Z-score 6.45
OE 0.06 (0.020.14)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint
2.25Z-score
OE missense 0.75 (0.690.81)
471 obs / 629.5 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios
LoF OE0.06 (0.020.14)
00.351.4
Missense OE0.75 (0.690.81)
00.61.4
Synonymous OE1.22
01.21.6
LoF obs/exp: 3 / 54.4Missense obs/exp: 471 / 629.5Syn Z: -2.80
DN
0.2099th %ile
GOF
0.2597th %ile
LOF
0.86top 5%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.14

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ATXN2L · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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