ATXN2

Chr 12ADMulti

ataxin 2

Also known as: ATX2, SCA2, TNRC13

Spinocerebellar ataxia type 2 is caused by an expanded CAG repeat in ATXN2: 31 or fewer is normal, 33–34 reduced penetrance, and 37 or more pathogenic. Shorter intermediate lengths — about 30–33 in European studies — do not cause ataxia but raise the risk of ALS. CAA interruptions stabilise the repeat and are linked to a parkinsonism presentation.

GeneReviewsOMIMResearchCurated summary · ACMG points to consider 2026, Saucier 2026, Elden 2010, Wang 2014

Primary Disease Associations & Inheritance

{Amyotrophic lateral sclerosis, susceptibility to, 13}MIM #183090
AD
{Parkinson disease, late-onset, susceptibility to}MIM #168600
ADMulti
Spinocerebellar ataxia 2MIM #183090
AD

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
95
Pubs (1 yr)
—
P/LP submissions
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P/LP missense
—
LOEUF · n/a
Multiple*
Mechanism· predicted
📖
GeneReview available — ATXN2
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

SCA2 and ALS risk: a CAG repeat in ATXN2

CAG repeat in exon 1 (a polyglutamine tract) — the cause of spinocerebellar ataxia type 2 (SCA2), and a risk factor for ALS. What matters is the number of repeats.

3237CAG repeats →
  • Normal · ≤31 for SCA2 — but see the ALS note
  • Borderline · 33–34 reduced penetrance (late-onset ataxia possible); 32 and 35–36 are not assigned by the sources
  • Pathogenic · ≥37 — SCA2

Intermediate lengths below the SCA2 range — about 30–33 repeats in European studies (27–33 in the first report) — raise the risk of ALS rather than cause ataxia; the lower cut-off differs between populations.

CAA interruptions stabilise the repeat; interrupted expansions lean towards a parkinsonism presentation.

Testing: Sequencing does not size this repeat; order the SCA2 repeat test. In ALS the same test reports the intermediate range.

Sources: ACMG points to consider 2026 (Table 1); Saucier, Neurol Genet 2026; Elden, Nature 2010; Wang meta-analysis 2014.

ClinVar Variant Classifications

0 submitted variants in ClinVar