ATP6V1G1

Chr 9

ATPase H+ transporting V1 subunit G1

Also known as: ATP6G, ATP6G1, ATP6GL, ATP6J, Vma10

The protein is a G subunit component of the V1 complex of vacuolar ATPase (V-ATPase), which acidifies intracellular organelles and is essential for protein sorting, endocytosis, synaptic vesicle function, and intracellular iron homeostasis. Mutations cause autosomal recessive cutis laxa with neurodegeneration, typically presenting in early childhood with connective tissue abnormalities, developmental delay, seizures, and progressive neurological deterioration. The gene shows moderate tolerance to loss-of-function variants, consistent with recessive inheritance patterns.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 1.25
Clinical SummaryATP6V1G1
Population Constraint (gnomAD)
Low constraint (pLI 0.10) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.25LOEUF
pLI 0.104
Z-score 1.23
OE 0.40 (0.161.25)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.62Z-score
OE missense 0.77 (0.600.99)
43 obs / 56.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.40 (0.161.25)
00.351.4
Missense OE0.77 (0.600.99)
00.61.4
Synonymous OE0.82
01.21.6
LoF obs/exp: 2 / 5.0Missense obs/exp: 43 / 56.1Syn Z: 0.63
DN
0.80top 25%
GOF
0.5758th %ile
LOF
0.2091th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ATP6V1G1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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