ATP6V1C1

Chr 8

ATPase H+ transporting V1 subunit C1

Also known as: ATP6C, ATP6D, VATC, Vma5

This gene encodes a component of vacuolar ATPase (V-ATPase), a multisubunit enzyme that mediates acidification of intracellular compartments of eukaryotic cells. V-ATPase dependent acidification is necessary for such intracellular processes as protein sorting, zymogen activation, receptor-mediated endocytosis, and synaptic vesicle proton gradient generation. V-ATPase is composed of a cytosolic V1 domain and a transmembrane V0 domain. The V1 domain consists of three A and three B subunits, two G subunits plus the C, D, E, F, and H subunits. The V1 domain contains the ATP catalytic site. The V0 domain consists of five different subunits: a, c, c', c'', and d. Additional isoforms of many of the V1 and V0 subunit proteins are encoded by multiple genes or alternatively spliced transcript variants. This gene is one of two genes that encode the V1 domain C subunit proteins and is found ubiquitously. This C subunit is analogous but not homologous to gamma subunit of F-ATPases. Previously, this gene was designated ATP6D. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…
1
Active trials
10
Pubs (1 yr)
P/LP submissions
P/LP missense
0.77
LOEUF
Mechanism

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.77LOEUF
pLI 0.000
Z-score 2.40
OE 0.45 (0.280.77)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.71Z-score
OE missense 0.65 (0.560.76)
126 obs / 192.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.45 (0.280.77)
00.351.4
Missense OE?0.65 (0.560.76)
00.61.4
Synonymous OE?1.07
01.21.6
LoF obs/exp: 10 / 22.2Missense obs/exp: 126 / 192.9Syn Z: -0.47

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ATP6V1C1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.