ATP6V0A1

Chr 17ADAR

ATPase H+ transporting V0 subunit a1

Also known as: ATP6N1, ATP6N1A, DEE104, NEDEBA, Stv1, VPP1, Vph1, a1

The protein is a subunit of the V0 complex of vacuolar ATPase that acidifies intracellular organelles including lysosomes, endosomes, and synaptic vesicles, which is essential for neuronal development and connectivity. Mutations cause developmental and epileptic encephalopathy and neurodevelopmental disorder with epilepsy and brain atrophy through both autosomal dominant and autosomal recessive inheritance patterns. The high constraint scores indicate the gene is highly intolerant to loss-of-function variants, suggesting mutations can cause disease through multiple mechanisms depending on the specific variant type.

OMIMResearchSummary from RefSeq, OMIM, UniProt
AD/ARLOEUF 0.272 OMIM phenotypes
Clinical SummaryATP6V0A1
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint
0.27LOEUF
pLI 0.998
Z-score 5.56
OE 0.14 (0.080.27)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
3.74Z-score
OE missense 0.52 (0.470.57)
246 obs / 475.8 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios
LoF OE0.14 (0.080.27)
00.351.4
Missense OE0.52 (0.470.57)
00.61.4
Synonymous OE0.90
01.21.6
LoF obs/exp: 7 / 49.0Missense obs/exp: 246 / 475.8Syn Z: 1.04

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ATP6V0A1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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