ATP2A1

Chr 16

ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1

Also known as: ATP2A, SERCA1

This gene encodes one of the SERCA Ca(2+)-ATPases, which are intracellular pumps located in the sarcoplasmic or endoplasmic reticula of muscle cells. This enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the sarcoplasmic reticulum lumen, and is involved in muscular excitation and contraction. Mutations in this gene cause some autosomal recessive forms of Brody disease, characterized by increasing impairment of muscular relaxation during exercise. Alternative splicing results in three transcript variants encoding different isoforms. [provided by RefSeq, Oct 2013]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtBrody disease
0
Active trials
27
Pubs (1 yr)
P/LP submissions
P/LP missense
0.83
LOEUF
Multiple*
Mechanism· predicted
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.83LOEUF
pLI 0.000
Z-score 2.50
OE 0.61 (0.460.83)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.54Z-score
OE missense 0.82 (0.760.89)
496 obs / 602.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.61 (0.460.83)
00.351.4
Missense OE?0.82 (0.760.89)
00.61.4
Synonymous OE?1.00
01.21.6
LoF obs/exp: 30 / 48.8Missense obs/exp: 496 / 602.3Syn Z: 0.04

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ATP2A1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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