ATG7

Chr 3

autophagy related 7

Also known as: APG7-LIKE, APG7L, GSA7, SCAR31

This gene encodes an E1-like activating enzyme that is essential for autophagy and cytoplasmic to vacuole transport. The encoded protein is also thought to modulate p53-dependent cell cycle pathways during prolonged metabolic stress. It has been associated with multiple functions, including axon membrane trafficking, axonal homeostasis, mitophagy, adipose differentiation, and hematopoietic stem cell maintenance. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtSpinocerebellar ataxia, autosomal recessive, 31

Clinical highlights

Gene-disease validity (ClinGen)
spinocerebellar ataxia, autosomal recessive 31 · ARStrongappropriate for clinical testing
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
446
Pubs (1 yr)
P/LP submissions
P/LP missense
0.94
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.94LOEUF
pLI 0.000
Z-score 1.86
OE 0.66 (0.470.94)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.37Z-score
OE missense 0.80 (0.730.88)
313 obs / 388.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.66 (0.470.94)
00.351.4
Missense OE?0.80 (0.730.88)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 23 / 34.8Missense obs/exp: 313 / 388.9Syn Z: 0.11

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ATG7 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.