ASPM

Chr 1AR

assembly factor for spindle microtubules

Also known as: ASP, Calmbp1, MCPH5

ASPM encodes a protein essential for normal mitotic spindle function in neuroblasts, with a preferential role in regulating neurogenesis during brain development. Mutations cause primary microcephaly type 5, an autosomal recessive disorder characterized by severely reduced brain size. The pathogenic mechanism involves gain-of-function effects that disrupt normal spindle regulation during neuronal cell division.

OMIMResearchSummary from RefSeq, OMIM, UniProt, Mechanism
LOFmechanismARLOEUF 0.741 OMIM phenotype
Clinical SummaryASPM
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Gene-Disease Validity (ClinGen)
autosomal recessive primary microcephaly · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.74LOEUF
pLI 0.000
Z-score 4.39
OE 0.63 (0.540.74)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-0.74Z-score
OE missense 1.05 (1.011.09)
1836 obs / 1749.3 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.63 (0.540.74)
00.351.4
Missense OE1.05 (1.011.09)
00.61.4
Synonymous OE1.17
01.21.6
LoF obs/exp: 105 / 166.1Missense obs/exp: 1836 / 1749.3Syn Z: -3.29
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveASPM-related pirmary microcephalyLOFAR

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.6939th %ile
GOF
0.6735th %ile
LOF
0.2485th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ASPM · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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