ASH1L

Chr 1AD

ASH1 like histone lysine methyltransferase

Also known as: ASH1, ASH1L1, KMT2H, MRD52

The protein is a trithorax group transcriptional activator that localizes to nuclear speckles and cell-cell tight junctions, containing AT hooks, a SET domain, PHD-finger motif, and bromodomain. Loss-of-function mutations cause autosomal dominant intellectual developmental disorder (intellectual developmental disorder, autosomal dominant 52). The gene is highly intolerant to loss-of-function variants, consistent with haploinsufficiency as the pathogenic mechanism.

OMIMResearchSummary from RefSeq, OMIM, UniProt, Mechanism
LOFmechanismADLOEUF 0.061 OMIM phenotype
Clinical SummaryASH1L
🧬
Gene-Disease Validity (ClinGen)
syndromic complex neurodevelopmental disorder · ADDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.
💊
Clinical Trials
1 active or recruiting trial — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint
0.06LOEUF
pLI 1.000
Z-score 10.13
OE 0.02 (0.010.06)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint
3.47Z-score
OE missense 0.75 (0.720.79)
1179 obs / 1565.3 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios
LoF OE0.02 (0.010.06)
00.351.4
Missense OE0.75 (0.720.79)
00.61.4
Synonymous OE0.93
01.21.6
LoF obs/exp: 3 / 125.3Missense obs/exp: 1179 / 1565.3Syn Z: 1.24
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
strongASH1L-related intellectual disabilityOTHERAD
DN
0.17100th %ile
GOF
0.1899th %ile
LOF
0.89top 5%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · 1 literature citation · LOEUF 0.06

Literature Evidence

LOFWhereas KMT2C or ASH1L haploinsufficiency results in a predominantly neurodevelopmental phenotype with occasional physical anomalies, KMT5B mutations cause an overgrowth syndrome with intellectual disability.PMID:29276005

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ASH1L · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold
Clinical Literature
Open Research Assistant →
Full-Text Mentions
NLP-detected gene mentions in article bodies · via PubTator3
PubTator3
Top 5 full-text resultsSearch PubTator3 ↗