ANP32B

Chr 9

acidic nuclear phosphoprotein 32 family member B

Also known as: APRIL, PHAPI2, SSP29

The protein functions as a histone chaperone that regulates transcription, controls cell proliferation and apoptosis, and facilitates nucleocytoplasmic transport of specific mRNAs. Mutations cause autosomal recessive developmental and epileptic encephalopathy with movement abnormalities, typically presenting in infancy with seizures, developmental delays, and progressive neurological deterioration. This gene is highly constrained against loss-of-function variants in the general population, indicating that complete loss of protein function is likely not tolerated.

OMIMResearchSummary from RefSeq, UniProt
LOFmechanismLOEUF 0.33
Clinical SummaryANP32B
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.96). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.33LOEUF
pLI 0.958
Z-score 3.26
OE 0.07 (0.020.33)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
1.27Z-score
OE missense 0.68 (0.560.81)
82 obs / 121.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.07 (0.020.33)
00.351.4
Missense OE0.68 (0.560.81)
00.61.4
Synonymous OE0.93
01.21.6
LoF obs/exp: 1 / 14.3Missense obs/exp: 82 / 121.2Syn Z: 0.39
DN
0.4289th %ile
GOF
0.2597th %ile
LOF
0.66top 25%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.33

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ANP32B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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