ANKRD30B

Chr 18

ankyrin repeat domain 30B

Also known as: NY-BR-1.1

0
Active trials
2
Pubs (1 yr)
62
P/LP submissions
0%
P/LP missense
0.91
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryANKRD30B
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
60 unique Pathogenic / Likely Pathogenic· 192 VUS of 298 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.91LOEUF
pLI 0.000
Z-score 2.14
OE 0.70 (0.550.91)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-0.72Z-score
OE missense 1.08 (1.011.16)
630 obs / 581.2 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.70 (0.550.91)
00.351.4
Missense OE1.08 (1.011.16)
00.61.4
Synonymous OE1.13
01.21.6
LoF obs/exp: 42 / 59.9Missense obs/exp: 630 / 581.2Syn Z: -1.46
DN
0.79top 25%
GOF
0.77top 25%
LOF
0.2288th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

298 submitted variants in ClinVar

Classification Summary

Pathogenic59
Likely Pathogenic1
VUS192
Likely Benign26
Benign6
59
Pathogenic
1
Likely Pathogenic
192
VUS
26
Likely Benign
6
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
59
0
59
Likely Pathogenic
0
0
1
0
1
VUS
1
133
58
0
192
Likely Benign
0
12
9
5
26
Benign
0
0
6
0
6
Total11451335284

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

ANKRD30B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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