ALG2

Chr 9AR

ALG2 alpha-1,3/1,6-mannosyltransferase

Also known as: CDG1I, CDGIi, CMS14, CMSTA3, NET38, hALPG2

This gene encodes a member of the glycosyltransferase 1 family. The encoded protein acts as an alpha 1,3 mannosyltransferase, mannosylating Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. Defects in this gene have been associated with congenital disorder of glycosylation type Ih (CDG-Ii). Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Congenital disorder of glycosylation, type IiMIM #607906
AR
Myasthenic syndrome, congenital, 14, with tubular aggregatesMIM #616228
AR

Clinical highlights

Gene-disease validity (ClinGen)
ALG2-congenital disorder of glycosylation · ARStrongappropriate for clinical testing
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
12
Pubs (1 yr)
P/LP submissions
P/LP missense
1.18
LOEUF
LOF
Mechanism· G2P
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GeneReview available — ALG2
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.18LOEUF
pLI 0.000
Z-score 1.13
OE 0.65 (0.381.18)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-0.08Z-score
OE missense 1.01 (0.911.13)
230 obs / 226.7 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.65 (0.381.18)
00.351.4
Missense OE?1.01 (0.911.13)
00.61.4
Synonymous OE?1.27
01.21.6
LoF obs/exp: 8 / 12.3Missense obs/exp: 230 / 226.7Syn Z: -2.15

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ALG2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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