AHCTF1

Chr 1

AT-hook containing transcription factor 1

Also known as: ELYS, MST108, MSTP108, TMBS62

Predicted to enable DNA binding activity. Involved in nuclear pore complex assembly and regulation of cytokinesis. Located in chromosome; nuclear body; and nuclear envelope. [provided by Alliance of Genome Resources, Jul 2025]

ResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
4
Pubs (1 yr)
P/LP submissions
P/LP missense
0.13
LOEUF· LoF intol.
LOF
Mechanism· predicted
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.13LOEUF
pLI 1.000
Z-score 9.11
OE 0.07 (0.040.13)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint?
-0.38Z-score
OE missense 1.03 (0.981.08)
1176 obs / 1139.8 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.07 (0.040.13)
00.351.4
Missense OE?1.03 (0.981.08)
00.61.4
Synonymous OE?1.01
01.21.6
LoF obs/exp: 8 / 112.1Missense obs/exp: 1176 / 1139.8Syn Z: -0.12

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

AHCTF1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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