AFG2B

Chr 15

AAA ATPase AFG2B

Also known as: DFNB119, NEDHLS, SPATA5L1

Enables identical protein binding activity and preribosome binding activity. Involved in DNA replication; regulation of ribosome biogenesis; and ribosomal large subunit biogenesis. Located in cytoplasm; nucleus; and spindle. Implicated in autosomal recessive nonsyndromic deafness. [provided by Alliance of Genome Resources, Jun 2026]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtDeafness, autosomal recessive, 119
UniProtNeurodevelopmental disorder with hearing loss and spasticity

Clinical highlights

Gene-disease validity (ClinGen)
hearing loss, autosomal recessive 119 · ARLimitednot for standalone diagnostic reporting
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
1
Pubs (1 yr)
P/LP submissions
P/LP missense
1.07
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.07LOEUF
pLI 0.000
Z-score 1.28
OE 0.74 (0.521.07)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.86Z-score
OE missense 0.88 (0.800.96)
346 obs / 394.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.74 (0.521.07)
00.351.4
Missense OE?0.88 (0.800.96)
00.61.4
Synonymous OE?0.95
01.21.6
LoF obs/exp: 20 / 27.2Missense obs/exp: 346 / 394.1Syn Z: 0.48

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

AFG2B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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