ADPRM

Chr 17

ADP-ribose/CDP-alcohol diphosphatase, manganese dependent

Also known as: C17orf48, MDS006, NBLA03831

NCBI Gene: 56985ENSG00000170222UniProt: Q3LIE5OMIM: 621211

The protein hydrolyzes ADP-ribose and related molecules including IDP-ribose, CDP-glycerol, CDP-choline and CDP-ethanolamine, and may function in immune cell signaling through ADP-ribose-mediated activation of TRPM2 during oxidative stress. Currently, no human diseases have been definitively associated with ADPRM mutations in the medical literature. The gene shows low constraint against loss-of-function variants, suggesting that complete loss of function may be tolerated.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 1.11
Clinical Summary— ADPRM
⚡
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
11 unique Pathogenic / Likely Pathogenic· 35 VUS of 59 total submissions
Explore recent and relevant literature in Research Assistant →

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

gnomAD
Tolerant — LoF & missense variants common in population
LoF Constraint
1.11LOEUF
pLI 0.000
Z-score 1.31
OE 0.59 (0.33–1.11)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
1.01Z-score
OE missense 0.79 (0.69–0.91)
144 obs / 182.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.59 (0.33–1.11)
0≤0.351.4
Missense OE0.79 (0.69–0.91)
0≤0.61.4
Synonymous OE0.85
0≤1.21.6
LoF obs/exp: 7 / 11.9Missense obs/exp: 144 / 182.2Syn Z: 0.95
DN
0.6357th %ile
GOF
0.5366th %ile
LOF
0.2970th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

59 submitted variants in ClinVar

ClinVar

Classification Summary

Pathogenic11
VUS35
Likely Benign5
Benign4
11
Pathogenic
35
VUS
5
Likely Benign
4
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
11
0
11
Likely Pathogenic
0
0
0
0
0
VUS
0
29
6
0
35
Likely Benign
0
2
2
1
5
Benign
0
0
4
0
4
Total03123155

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

ADPRM · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Full-Text Mentions
NLP-detected gene mentions in article bodies · via PubTator3
PubTator3
Top 5 full-text resultsSearch PubTator3 ↗
Key Publications
Landmark & review papers · by relevance
PubMed
Top 3 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found

Top 5 resultsSearch Europe PMC ↗

External Resources

Links to major genomics databases and tools

Franklin by Genoox
AI-powered variant curation and clinical analysis
DECIPHER
Genomic variants and phenotypes in rare disease patients