ADCYAP1

Chr 18

adenylate cyclase activating polypeptide 1

Also known as: PACAP

This gene encodes PACAP, a neuropeptide that stimulates adenylyl cyclase to increase cAMP levels and activate downstream gene transcription, serving as a key mediator of neuroendocrine stress responses with neuroprotective and neurodevelopmental functions. Mutations cause autosomal recessive developmental and epileptic encephalopathy with microcephaly, involving severe neurodevelopmental impairment and seizures with onset in infancy. The gene shows moderate constraint against loss-of-function variants (LOEUF 0.752), consistent with recessive inheritance where biallelic mutations are required for disease manifestation.

Summary from RefSeq, UniProt
Research Assistant →
6
Active trials
19
Pubs (1 yr)
0
P/LP submissions
P/LP missense
0.75
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryADCYAP1
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.52) — some intolerance to loss-of-function variants.
💊
Clinical Trials
6 active or recruiting trials — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.75LOEUF
pLI 0.524
Z-score 1.96
OE 0.16 (0.060.75)
Moderately constrained

Typical tolerance to LoF variation

Missense Constraint
-0.43Z-score
OE missense 1.12 (0.961.31)
112 obs / 99.8 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.16 (0.060.75)
00.351.4
Missense OE1.12 (0.961.31)
00.61.4
Synonymous OE1.52
01.21.6
LoF obs/exp: 1 / 6.3Missense obs/exp: 112 / 99.8Syn Z: -2.77
DN
0.75top 25%
GOF
0.6444th %ile
LOF
0.4332th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ADCYAP1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

Migraine

Mechanistic Studies of Psilocybin in Headache Disorders

RECRUITING
NCT06464367Phase EARLY_PHASE1Yale UniversityStarted 2025-05-19
PsilocybinPlacebo
Post-Traumatic HeadacheConcussion, MildMTBI - Mild Traumatic Brain Injury

GAIN Symptoms: Post-traumatic Headache

ACTIVE NOT RECRUITING
NCT05857761Phase NAUniversity of AarhusStarted 2023-08-28
Active repetitive transcranial magnetic stimulation (rTMS)Sham repetitive transcranial magnetic stimulation (rTMS)
MigraineTranscranial Magnetic Stimulation Repetitive

Individualized Location-based rTMS for Migraine Treatment: A Multicenter Clinical Study

NOT YET RECRUITING
NCT07086274Phase NAFirst Affiliated Hospital of Zhejiang UniversityStarted 2025-07-25
Individualized location-based Repetitive Transcranial Magnetic StimulationTraditional location-based Repetitive Transcranial Magnetic Stimulation
MigraineCluster HeadacheTrigeminal Autonomic Cephalgia

Pain Biomarker Study

ENROLLING BY INVITATION
NCT03511846Phase PHASE1The University of Texas Health Science Center, HoustonStarted 2018-03-21
Oral capsaicinTopical capsaicinIntranasal capsaicin
Chronic Migraine HeadacheRadiofrequency AblationGreater Occipital Nerve Block

The Effect of Interventional Procedures on Serum CGRP and PACAP-38 Levels in Chronic Migraine

ACTIVE NOT RECRUITING
NCT07395908Phase NAAydin Adnan Menderes UniversityStarted 2025-05-29
Greater occipital nerve Pulse radiofrequencyGreater occipital nerve block
Migraine DisordersPainAutoimmune Diseases

The Role of Cytokines and Regulatory T Lymphocytes in Migraine Pathophysiology.

RECRUITING
NCT06426316Phase NAUniversity Hospital, Clermont-FerrandStarted 2025-06-02
Blood test
Clinical Literature
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